rs11227990 chr11:67826685 G>A
- Sequence
cacttgccagacgagccgggtgtc[G/A]tcagtcgcctggctctgtgcccaa
- ASB in cell types
- HEK293 (embryonic kidney) MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- ZN660_HUMAN ZN366_HUMAN ZIC2_HUMAN ZN692_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZN660_HUMAN | 3.20 | -2.93 | 1.00 | n/a | n/a | |||
| ZN366_HUMAN | 2.54 | -2.20 | 1.00 | n/a | n/a | |||
| ZIC2_HUMAN | 2.69 | -2.43 | 1.00 | n/a | n/a | |||
| ZN692_HUMAN | 2.79 | -2.86 | 1.00 | n/a | n/a | |||
| SCRT2_HUMAN | 2.63 | -2.67 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid