rs112358601 chr1:9539589 C>T
- Sequence
gcatggaggcgttgccggcagccc[C/T]ctgagggcagcggggagacaagac
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) upper lobe of left lung uterus
- ASB for transcription factors
- CTCF_HUMAN BACH1_HUMAN SMCA5_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.17 | -0.06 | 1.08 | -3.63 | Concordant | |||
| BACH1_HUMAN | 2.84 | -2.58 | 1.00 | n/a | No Hit | |||
| SMCA5_HUMAN | 2.63 | -2.67 | 1.00 | n/a | No Hit |
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Motif analysis
