rs11253202 chr10:5488422 T>C
- Sequence
gaaagtgcaggcacaccatgtctc[T/C]gagtggtggggtggggacagaggc
- ASB in cell types
- Peyer's patch MCF7 (Invasive ductal breast carcinoma) CWR22 (prostate carcinoma)
- ASB for transcription factors
- CTCF_HUMAN CLOCK_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.17 | 1.80 | 1.50 | n/a | No Hit | |||
| CLOCK_HUMAN | 3.11 | n/a | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Brain_Putamen_basal_ganglia, Esophagus_Mucosa, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg