rs1130683 chr1:11072160 G>A
- Sequence
tacttgtacctgggccagcttcca[G/A]cggttgctgatctataatgaaagc
- ASB in cell types
- LNCaP95
- ASB for transcription factors
- ANDR_HUMAN TBP_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 1.47 | 0.50 | 1.43 | n/a | No Hit | |||
| TBP_HUMAN | 2.06 | -0.21 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP autism, birth weight, microalbuminuria, obesity with early age of onset (age >2), parkinsons disease, paternal transmission distortion
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid, Whole_Blood