rs1132115 chr17:82321536 T>A
- Sequence
ggccgagggactgagggatgcgcg[T/A]ccagccccggagggcggcgtccac
- ASB in cell types
- T47D (invasive ductal carcinoma) A549 (lung carcinoma)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN ZN519_HUMAN SMC3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.20 | 0.54 | 1.45 | n/a | No Hit | |||
| RAD21_HUMAN | 1.26 | 0.30 | 1.90 | n/a | n/a | |||
| ZN519_HUMAN | 2.98 | -5.49 | 2.00 | n/a | n/a | |||
| SMC3_HUMAN | 1.67 | 0.39 | 2.85 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Pancreas, Testis, Thyroid