rs1132115 chr17:82321536 T>A

Sequence
ggccgagggactgagggatgcgcg[T/A]ccagccccggagggcggcgtccac
ASB in cell types
T47D (invasive ductal carcinoma) A549 (lung carcinoma)
ASB for transcription factors
CTCF_HUMAN RAD21_HUMAN ZN519_HUMAN SMC3_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 1.20 0.54 9.9·10-101.00 1.45 n/a No Hit
RAD21_HUMAN 1.26 0.30 2.1·10-31.00 1.90 n/a n/a
ZN519_HUMAN 2.98 -5.49 2.9·10-31.00 2.00 n/a n/a
SMC3_HUMAN 1.67 0.39 3.5·10-31.00 2.85 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Lung,  Muscle_Skeletal,  Pancreas,  Testis,  Thyroid

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