rs114305335 chr6:33092170 C>T
- Sequence
ggccccagtgctccccctggaggt[C/T]acaggtgtcctcggccatgggaac
- ASB in cell types
- GM19239 (male B-cells lymphoblastoid cell line) liver
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.81 | -0.28 | 1.38 | -1.54 | Weak Concordant | |||
| RAD21_HUMAN | -2.22 | 2.19 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Cells_Cultured_fibroblasts, Esophagus_Mucosa, Heart_Left_Ventricle, Muscle_Skeletal, Thyroid, Whole_Blood