rs1143726 chr1:45134668 G>C
- Sequence
aatcatttccttctttttggttta[G/C]attggaaaaaagcatgatgctgaa
- ASB in cell types
- HepG2 (hepatoblastoma)
- ASB for transcription factors
- RXRB_HUMAN FOXA2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RXRB_HUMAN | -2.34 | 2.73 | 1.00 | n/a | No Hit | |||
| FOXA2_HUMAN | -1.28 | 1.32 | 1.28 | 3.98 | Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid