rs11467 chr8:38787396 A>G
- Sequence
aggggaggaggccgaggaggacgc[A/G]gcgccggctgccggcgggaggaag
- ASB in cell types
- GM19238 (female B-cells lymphoblastoid cell lines) GM19239 (male B-cells lymphoblastoid cell line) GM12890 (Lymphoblastoid Cell Lines) GM12892 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- CTCF_HUMAN BC11B_HUMAN CTCFL_HUMAN ERG_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 3.40 | 0.31 | 1.25 | 0.14 | Weak Discordant | |||
| BC11B_HUMAN | 2.42 | -4.46 | 2.00 | n/a | n/a | |||
| CTCFL_HUMAN | 2.52 | n/a | 1.33 | 0.07 | Weak Discordant | |||
| ERG_HUMAN | 0.61 | n/a | 1.50 | 0.75 | Weak Discordant | |||
| RBBP5_HUMAN | 2.30 | n/a | 2.50 | n/a | n/a |
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Motif analysis
