rs114693598 chr1:161530922 G>T
- Sequence
ctccgccctccagcttccagagcc[G/T]gtggcttctgcgttcaccgccccg
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) MDA-MB-231p27CK-DD (breast cancer cells, phosphimimetic p27 cell line) MDA-MB-231 (breast adenocarcinoma) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- CDN1B_HUMAN JUN_HUMAN NFAC3_HUMAN IKZF2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CDN1B_HUMAN | 1.98 | -0.95 | 1.83 | n/a | n/a | |||
| JUN_HUMAN | 1.83 | -0.33 | 1.92 | n/a | No Hit | |||
| NFAC3_HUMAN | 3.09 | -3.23 | 1.00 | n/a | No Hit | |||
| IKZF2_HUMAN | 2.10 | -0.13 | 1.00 | n/a | n/a | |||
| ANDR_HUMAN | 3.08 | -5.59 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood