rs115040231 chr7:158829722 C>T

Sequence
cgtcatcacgcgagcgttgtgtct[C/T]ggctggcgggagccggggacggga
ASB in cell types
HEK293 (embryonic kidney) A549 (lung carcinoma) primary B-CLL cells monocytes from periferal blood
ASB for transcription factors
ESR1_HUMAN RBBP5_HUMAN SRBP2_HUMAN FOXA2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ESR1_HUMAN 2.30 n/a 4.8·10-31.00 2.00 n/a No Hit
RBBP5_HUMAN 2.11 n/a 5.3·10-31.00 2.00 n/a n/a
SRBP2_HUMAN 2.08 n/a 0.011.00 2.50 n/a No Hit
FOXA2_HUMAN 2.54 -1.75 0.031.00 2.00 n/a No Hit
CREB1_HUMAN -3.29 1.25 1.000.05 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Artery_Tibial,  Cells_Cultured_fibroblasts,  Esophagus_Mucosa,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Testis,  Thyroid,  Whole_Blood

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