rs115215558 chr2:88017031 A>G
- Sequence
tggcagggacagggcggccttgta[A/G]cgccctcggtgttggaagggaaga
- ASB in cell types
- K562 (myelogenous leukemia) HEK293 (embryonic kidney) HCT-116 (colon carcinoma) GM02610 (Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN PKNX1_HUMAN ZFX_HUMAN ZN189_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.68 | 2.45 | 1.29 | n/a | No Hit | |||
| PKNX1_HUMAN | 0.59 | -0.07 | 1.67 | n/a | No Hit | |||
| ZFX_HUMAN | 2.18 | 1.25 | 1.50 | n/a | No Hit | |||
| ZN189_HUMAN | 2.49 | -2.14 | 1.00 | n/a | n/a | |||
| ILF3_HUMAN | 2.16 | -1.07 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Tibial, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Pancreas, Thyroid