rs115225200 chr1:65148577 C>T
- Sequence
gtgaggggctgcggggacgagggc[C/T]gggggcgagccgcgttgggctggg
- ASB in cell types
- RCC4 (kidney cancer cell line) K562 (myelogenous leukemia)
- ASB for transcription factors
- HIF1A_HUMAN E2F8_HUMAN EPAS1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| HIF1A_HUMAN | 1.13 | -0.44 | 1.33 | n/a | No Hit | |||
| E2F8_HUMAN | 1.95 | -1.53 | 1.00 | n/a | n/a | |||
| EPAS1_HUMAN | 1.55 | -0.92 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Tibial, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Thyroid