rs11532774 chr7:107561134 T>C
- Sequence
ttacaaagatcaaacacaacggga[T/C]gtggcatttgagggctgacagcct
- ASB in cell types
- ALL-SIL (acute lymphoblastic leukemia) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- TLX1_HUMAN ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TLX1_HUMAN | 2.23 | -3.62 | 1.50 | n/a | n/a | |||
| ANDR_HUMAN | 2.05 | -0.74 | 2.00 | 2.94 | Discordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cortex, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Colon_Sigmoid, Heart_Atrial_Appendage, Lung, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Testis