rs115478533 chr19:16111505 G>A
- Sequence
aagccacgccccgccaggctgccg[G/A]cgcgcgagcggttggcgccgctcc
- ASB in cell types
- 22RV1 (prostate carcinoma) pancreas 2588 (Lymphoblastoid Cell Lines) MOLT-4 (Adult T acute lymphoblastic leukemia)
- ASB for transcription factors
- ANDR_HUMAN CREB1_HUMAN STAT1_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 2.24 | 1.44 | 2.00 | n/a | No Hit | |||
| CREB1_HUMAN | -0.42 | 1.72 | 1.00 | n/a | No Hit | |||
| STAT1_HUMAN | 1.39 | -4.87 | 3.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Brain_Cerebellum, Breast_Mammary_Tissue, Esophagus_Mucosa, Esophagus_Muscularis, Muscle_Skeletal, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Thyroid