rs11550901 chr1:156741025 G>T
- Sequence
tcttcccgcacctgcctctcggac[G/T]ggcacctctagggcgggcggccct
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) breast tumor CD14+ monocytes MOLT-4 (Adult T acute lymphoblastic leukemia)
- ASB for transcription factors
- FOXK2_HUMAN ESR1_HUMAN STAT1_HUMAN IRF5_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXK2_HUMAN | 3.26 | -0.11 | 1.25 | n/a | n/a | |||
| ESR1_HUMAN | 2.75 | -0.13 | 2.10 | n/a | No Hit | |||
| STAT1_HUMAN | 2.26 | -0.45 | 3.00 | n/a | No Hit | |||
| IRF5_HUMAN | 1.94 | n/a | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Esophagus_Mucosa, Esophagus_Muscularis, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Whole_Blood