rs115597141 chr5:75236941 G>A
- Sequence
gggggcagccgctcgccacacgac[G/A]gagccctgcgcagcgctcggcccc
- ASB in cell types
- K562 (myelogenous leukemia) BEAS-2B (bronchial epithelium) adult erythroblasts MM1.S (plasma cell myeloma)
- ASB for transcription factors
- CTCFL_HUMAN GCR_HUMAN KDM6A_HUMAN CTCF_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCFL_HUMAN | 3.72 | n/a | 2.00 | -4.19 | Concordant | |||
| GCR_HUMAN | 0.15 | 1.72 | 2.00 | n/a | No Hit | |||
| KDM6A_HUMAN | 2.38 | n/a | 2.50 | n/a | n/a | |||
| CTCF_HUMAN | 0.88 | 0.39 | 1.71 | -3.42 | Concordant | |||
| SAFB1_HUMAN | 2.54 | -1.75 | 2.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Brain_Cerebellar_Hemisphere, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Muscle_Skeletal, Nerve_Tibial, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid