rs115669754 chr2:85561615 C>A
- Sequence
gattccttgcttggcggcaggggg[C/A]ggaacaaggagccttggagcgggg
- ASB in cell types
- foreskin keratinocyte Peyer's patch prostate gland HEK293 (embryonic kidney)
- ASB for transcription factors
- CTCF_HUMAN ELF1_HUMAN ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.14 | -0.41 | 1.31 | -2.93 | Concordant | |||
| ELF1_HUMAN | 1.87 | -1.15 | 1.25 | n/a | No Hit | |||
| ANDR_HUMAN | 2.29 | -0.82 | 2.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Esophagus_Mucosa, Lung, Muscle_Skeletal, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood