rs11580088 chr1:16513732 C>G
- Sequence
ctctatgaggtgagaacacattcc[C/G]cgctagcacagaaatcctacaaac
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells lymphoblastoid cell line) GM12891 (male B- cells lymphoblastoid cell line)
- ASB for transcription factors
- NELFA_HUMAN IKZF2_HUMAN IKZF1_HUMAN STAG1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NELFA_HUMAN | 2.23 | -1.38 | 2.00 | n/a | n/a | |||
| IKZF2_HUMAN | 2.12 | n/a | 2.50 | n/a | n/a | |||
| IKZF1_HUMAN | 2.19 | n/a | 2.00 | n/a | No Hit | |||
| STAG1_HUMAN | 2.21 | -1.89 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Hippocampus, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood