rs11582514 chr1:183023026 T>C
- Sequence
gcggagcccaaggaccccagcgac[T/C]cccgcgcggggagcgggtctgcga
- ASB in cell types
- BEAS-2B (bronchial epithelium) HEK293 (embryonic kidney) HeLa (cervical adenocarcinoma) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- GCR_HUMAN INT11_HUMAN IKZF2_HUMAN CRTC2_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GCR_HUMAN | 1.66 | 0.45 | 1.00 | n/a | No Hit | |||
| INT11_HUMAN | 2.58 | -3.67 | 2.00 | n/a | n/a | |||
| IKZF2_HUMAN | 2.42 | -0.67 | 1.00 | n/a | n/a | |||
| CRTC2_HUMAN | 2.16 | -4.72 | 2.00 | n/a | n/a | |||
| TYY1_HUMAN | 1.23 | 0.25 | 1.70 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Breast_Mammary_Tissue, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood