rs115825639 chr13:42048793 A>C
- Sequence
agaggatggcaggggccggaggcc[A/C]gcaccaccctccgggcgccgctgg
- ASB in cell types
- GM19239 (male B-cells lymphoblastoid cell line)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.60 | -0.51 | 1.17 | -1.06 | Weak Concordant | |||
| STAG1_HUMAN | 1.59 | -0.29 | 1.17 | n/a | n/a |
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Motif analysis
