rs11583762 chr1:155112794 A>G
- Sequence
caccactgcactcaagcctgggca[A/G]cagagggagactctgtctcaaaaa
- ASB in cell types
- HEK293T (embryonic kidney) GM02630 (Fanconi anemi) MCF7 (Invasive ductal breast carcinoma) HCT-116 (colon carcinoma)
- ASB for transcription factors
- CTCF_HUMAN ZN384_HUMAN ZN579_HUMAN RAD21_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.42 | 2.98 | 1.50 | 2.71 | Concordant | |||
| ZN384_HUMAN | -3.87 | 4.22 | 1.00 | n/a | No Hit | |||
| ZN579_HUMAN | -2.69 | 3.04 | 1.00 | n/a | n/a | |||
| RAD21_HUMAN | -0.28 | 2.85 | 1.17 | n/a | n/a | |||
| STAG1_HUMAN | -2.34 | 2.29 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Hippocampus, Brain_Hypothalamus, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Whole_Blood