rs11584356 chr1:39799850 G>A
- Sequence
gcctctctctgccccctggtggac[G/A]ccggcagcctagcacccgggggga
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) WA09 (embryonic stem cells) liver epidermal keratinocytes
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN ZBTB2_HUMAN TRI22_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.67 | 0.44 | 1.30 | 0.29 | Weak Discordant | |||
| STAG1_HUMAN | 0.97 | -1.03 | 1.77 | n/a | n/a | |||
| ZBTB2_HUMAN | 2.94 | -3.02 | 1.00 | n/a | n/a | |||
| TRI22_HUMAN | 1.79 | -0.88 | 1.00 | n/a | n/a | |||
| IKZF2_HUMAN | 1.45 | -1.08 | 1.50 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Brain_Caudate_basal_ganglia, Colon_Transverse, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Whole_Blood