rs11584356 chr1:39799850 G>A

Sequence
gcctctctctgccccctggtggac[G/A]ccggcagcctagcacccgggggga
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line) WA09 (embryonic stem cells) liver epidermal keratinocytes
ASB for transcription factors
CTCF_HUMAN STAG1_HUMAN ZBTB2_HUMAN TRI22_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 1.67 0.44 9.1·10-121.00 1.30 0.29 Weak Discordant
STAG1_HUMAN 0.97 -1.03 3.8·10-51.00 1.77 n/a n/a
ZBTB2_HUMAN 2.94 -3.02 5.8·10-31.00 1.00 n/a n/a
TRI22_HUMAN 1.79 -0.88 0.011.00 1.00 n/a n/a
IKZF2_HUMAN 1.45 -1.08 0.021.00 1.50 n/a n/a
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Motif analysis

CTCF_HUMAN Weak Discordant
CTCF_HUMAN pic

Genetic associations

GTEx eQTL Brain_Caudate_basal_ganglia,  Colon_Transverse,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Testis,  Whole_Blood

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