rs11587649 chr1:66242812 C>A
- Sequence
cctccaaaattgccagcagcccca[C/A]ctgctgggcttggaggctggggcc
- ASB in cell types
- HCT-116 (colon carcinoma) HCT-116-RAD21-mAC TTC-1240 (Rhabdoid tumor of the kidney)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN SMRC1_HUMAN SMCA4_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 3.15 | -1.20 | 1.88 | -4.90 | Concordant | |||
| RAD21_HUMAN | 1.13 | 0.07 | 1.00 | n/a | n/a | |||
| SMRC1_HUMAN | -1.23 | 2.58 | 1.50 | n/a | n/a | |||
| SMCA4_HUMAN | -4.89 | 2.69 | 1.42 | n/a | n/a |
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Motif analysis
