rs11588350 chr1:16905293 C>T
- Sequence
gctatgttgttgtctcttattttt[C/T]caaacgtggaaacctctgttttgt
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells lymphoblastoid cell line) HepG2 (hepatoblastoma) CTV-1 (Adult T acute lymphoblastic leukemia)
- ASB for transcription factors
- ZN316_HUMAN MNT_HUMAN SPT5H_HUMAN ARI1B_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZN316_HUMAN | 2.48 | n/a | 4.00 | n/a | n/a | |||
| MNT_HUMAN | 3.37 | -0.94 | 2.50 | n/a | n/a | |||
| SPT5H_HUMAN | 1.52 | n/a | 5.00 | n/a | n/a | |||
| ARI1B_HUMAN | 3.73 | n/a | 3.00 | n/a | n/a | |||
| T2FA_HUMAN | 1.92 | n/a | 4.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Sun_Exposed_Lower_leg, Stomach, Thyroid, Whole_Blood