rs11592150 chr10:69424515 A>C
- Sequence
tgctgactccccacttcctactgg[A/C]gggcagtggcaacaacagggactt
- ASB in cell types
- K562 (myelogenous leukemia) CTV-1 (Adult T acute lymphoblastic leukemia)
- ASB for transcription factors
- E4F1_HUMAN IKZF1_HUMAN ILF3_HUMAN KDM1A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| E4F1_HUMAN | 0.61 | 2.93 | 1.00 | n/a | n/a | |||
| IKZF1_HUMAN | -0.52 | 1.63 | 1.00 | n/a | No Hit | |||
| ILF3_HUMAN | -1.42 | 1.83 | 1.00 | n/a | n/a | |||
| KDM1A_HUMAN | -1.09 | 1.75 | 1.00 | n/a | n/a | |||
| SPI1_HUMAN | 0.58 | 1.77 | 1.29 | 0.65 | Weak Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Nerve_Tibial, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis