rs11598549 chr10:125000680 G>A
- Sequence
agggctgacagctcagagccttgc[G/A]atcccagaaggtgtcaccagaggc
- ASB in cell types
- IMR-5 (Neuroblastoma) GM12878 (female B-cells lymphoblastoid cell line) VCaP (prostate carcinoma) PANC1 (pancreatic ductal adenocarcinoma)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN RAD21_HUMAN PKNX1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.05 | 1.72 | 1.43 | n/a | No Hit | |||
| STAG1_HUMAN | -0.76 | 2.05 | 1.08 | n/a | n/a | |||
| RAD21_HUMAN | -0.86 | 3.05 | 1.44 | n/a | n/a | |||
| PKNX1_HUMAN | -1.81 | 2.20 | 1.00 | n/a | No Hit |
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