rs11607534 chr11:58647321 A>G
- Sequence
ttgctgcagctgctgtgggggatg[A/G]aggtgtggttctcaggccaatggg
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) GM12890 (Lymphoblastoid Cell Lines) GM19240 (B cells Lymphoblastoid Cell Lines) GM17942 (lymphoblastoid cell)
- ASB for transcription factors
- CTCF_HUMAN COE1_HUMAN STAG1_HUMAN IKZF2_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.06 | 1.19 | 1.30 | n/a | No Hit | |||
| COE1_HUMAN | 2.19 | -3.09 | 1.25 | n/a | No Hit | |||
| STAG1_HUMAN | -0.35 | 1.30 | 1.42 | n/a | n/a | |||
| IKZF2_HUMAN | -1.00 | 1.57 | 1.00 | n/a | n/a | |||
| COT1_HUMAN | -0.92 | 0.92 | 1.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Mucosa, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Testis, Thyroid