rs11628171 chr14:75296388 A>G
- Sequence
tggaaatagcaaaacttgacagaa[A/G]aaaaacccaagccaaaccaaaaca
- ASB in cell types
- GBM39 (Human brain tumor) OCI-LY7 (diffuse large B-cell lymphoma) pancreas CTV-1 (Adult T acute lymphoblastic leukemia)
- ASB for transcription factors
- CTCF_HUMAN SMC3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.54 | 0.78 | 1.19 | n/a | No Hit | |||
| SMC3_HUMAN | 0.76 | 2.40 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Tibial, Lung, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood