rs116365332 chr2:9843688 G>A
- Sequence
cggctggaggaaggcggggcggag[G/A]gctgcagggcgggctaaggactgg
- ASB in cell types
- HepG2 (hepatoblastoma) MCF7L-P(immortalized breast epithelial cell line) 22RV1 (prostate carcinoma) CD14+ monocytes
- ASB for transcription factors
- NRF1_HUMAN ANDR_HUMAN STAT1_HUMAN RBBP5_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NRF1_HUMAN | 2.13 | -1.35 | 1.50 | n/a | No Hit | |||
| ANDR_HUMAN | 3.00 | 0.29 | 1.70 | n/a | No Hit | |||
| STAT1_HUMAN | 1.84 | n/a | 3.00 | n/a | No Hit | |||
| RBBP5_HUMAN | 1.82 | n/a | 2.50 | n/a | n/a | |||
| RFOX2_HUMAN | 1.77 | -0.73 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid, Whole_Blood