rs11643556 chr16:25067017 G>C
- Sequence
cagctagccgaccaagccccggaa[G/C]gcgagtgccggagggggcgggaca
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) breast tumor HepG2 (hepatoblastoma)
- ASB for transcription factors
- ELF1_HUMAN TYY1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ELF1_HUMAN | 2.63 | -2.29 | 1.00 | -3.14 | Concordant | |||
| TYY1_HUMAN | n/a | 2.76 | 2.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Breast_Mammary_Tissue, Colon_Transverse, Esophagus_Muscularis, Muscle_Skeletal, Nerve_Tibial, Ovary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Testis, Thyroid