rs11646911 chr16:31472301 C>T
- Sequence
catctccccatccctgtcttctta[C/T]ttctgcttttcgcctctgcccgcg
- ASB in cell types
- HEK293 (embryonic kidney) SUM159PT (Triple negative breast cancer)
- ASB for transcription factors
- ZBT8A_HUMAN KLF9_HUMAN ZN335_HUMAN ZN189_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZBT8A_HUMAN | -2.36 | 2.72 | 1.00 | n/a | n/a | |||
| KLF9_HUMAN | n/a | 2.76 | 1.00 | n/a | No Hit | |||
| ZN335_HUMAN | -2.63 | 1.44 | 1.33 | n/a | No Hit | |||
| ZN189_HUMAN | -1.85 | 2.25 | 1.00 | n/a | n/a | |||
| ZNF2_HUMAN | -2.66 | 2.57 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GRASP hdl cholesterol, infant head circumference, premature ovarian failure, stabilized warfarin dose, tetrology of fallot, total cholesterol
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood