rs11652407 chr17:7307341 G>A
- Sequence
gggctccttattgcgcaggcgcaa[G/A]gactgcccggtaggacgagcggtc
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) 22RV1 (prostate carcinoma) HepG2 (hepatoblastoma) adult erythroblasts
- ASB for transcription factors
- NRF1_HUMAN FOXK2_HUMAN ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NRF1_HUMAN | 1.88 | 0.11 | 1.00 | -2.64 | Concordant | |||
| FOXK2_HUMAN | 2.72 | -0.52 | 1.25 | n/a | n/a | |||
| ANDR_HUMAN | 3.16 | n/a | 2.00 | n/a | No Hit |
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Motif analysis
