rs11652506 chr17:2849037 C>G
- Sequence
tgtgagcgttcagctgtgtgcgag[C/G]gggcttcagagtgatatcccagag
- ASB in cell types
- A549 (lung carcinoma) HCT-116 (colon carcinoma) pancreas GM02630 (Fanconi anemi)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN SMC3_HUMAN SNAI2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.93 | 0.48 | 1.40 | n/a | No Hit | |||
| RAD21_HUMAN | 1.41 | 0.35 | 2.25 | n/a | n/a | |||
| SMC3_HUMAN | 1.41 | 0.22 | 2.82 | n/a | n/a | |||
| SNAI2_HUMAN | n/a | 2.19 | 6.00 | n/a | No Hit |
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