rs11652544 chr17:28925971 C>T
- Sequence
gctggcaggtgcctctaacaggcc[C/T]tgctctaacctaattagggatgca
- ASB in cell types
- keratinocytes
- ASB for transcription factors
- SNAI2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SNAI2_HUMAN | 3.15 | -3.29 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP ldl cholesterol, mean corpuscular hemoglobin concentration (mchc), parkinsons disease, total cholesterol
GTEx eQTL Brain_Cerebellum, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Heart_Left_Ventricle, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Whole_Blood