rs11666364 chr19:50357371 C>A
- Sequence
accggcctggaatgccgacttgct[C/A]gctctctgcatcccacgggaaaag
- ASB in cell types
- HEK293 (embryonic kidney) K562 (myelogenous leukemia) A549 (lung carcinoma) erythroid cells
- ASB for transcription factors
- RAD21_HUMAN IKZF2_HUMAN ZN600_HUMAN ZN629_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD21_HUMAN | 1.13 | -0.10 | 1.26 | n/a | n/a | |||
| IKZF2_HUMAN | 0.90 | -0.57 | 1.00 | n/a | n/a | |||
| ZN600_HUMAN | -2.66 | 2.57 | 1.00 | n/a | n/a | |||
| ZN629_HUMAN | -2.56 | 2.48 | 1.00 | n/a | n/a | |||
| ZBT12_HUMAN | -1.66 | 2.71 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Putamen_basal_ganglia, Esophagus_Mucosa, Lung, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Thyroid, Whole_Blood