rs11683694 chr2:111945070 C>T
- Sequence
acatcgaagtacaaggtaagtcca[C/T]agaccagagtcccattgccagaga
- ASB in cell types
- LNCaP (prostate carcinoma) VCaP (prostate carcinoma) MCF7 TamR (invasive ductal breast carcinoma Tamoxifen resistant) breast tumor xenograft
- ASB for transcription factors
- FOXA1_HUMAN ANDR_HUMAN HXB13_HUMAN ESR1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 1.62 | -0.04 | 1.74 | n/a | No Hit | |||
| ANDR_HUMAN | 1.38 | 0.27 | 1.92 | n/a | No Hit | |||
| HXB13_HUMAN | 1.50 | 0.13 | 1.83 | n/a | No Hit | |||
| ESR1_HUMAN | 1.94 | -0.08 | 1.78 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellum, Brain_Frontal_Cortex_BA9, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid, Whole_Blood