rs116891591 chr6:41787593 C>T
- Sequence
atgtcggactaagcgaacagcgcc[C/T]ccactgccggccggtagcagccgg
- ASB in cell types
- ID00014 (lymphoblastoid cell, DiGeorge syndrome) neutrophils from periferal blood MOLM-13(acute monocytic leukemia(AML), Homo sapiens) ID00015 (lymphoblastoid cell)
- ASB for transcription factors
- CTCF_HUMAN CDK8_HUMAN OLIG2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.79 | 0.15 | 1.44 | -2.45 | Concordant | |||
| CDK8_HUMAN | 1.26 | -0.18 | 2.00 | n/a | n/a | |||
| OLIG2_HUMAN | -1.27 | 1.74 | 1.00 | n/a | No Hit |
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Motif analysis
