rs11691940 chr2:20141670 G>C

Sequence
tcaccacggctgacatcaccttca[G/C]ctccacccctttcccagcaaaccc
ASB in cell types
HEK293 (embryonic kidney) MCF7 (Invasive ductal breast carcinoma) K562 (myelogenous leukemia) renal cortex
ASB for transcription factors
ATF3_HUMAN CREB1_HUMAN FOS_HUMAN KLF9_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ATF3_HUMAN 1.67 -0.17 2.3·10-71.00 1.40 n/a No Hit
CREB1_HUMAN 2.00 -3.80 4.9·10-71.00 2.00 n/a No Hit
FOS_HUMAN 2.56 -0.32 6.9·10-51.00 1.00 n/a n/a
KLF9_HUMAN 3.38 n/a 9.6·10-51.00 1.00 -2.89 Concordant
ZN629_HUMAN 2.42 -2.15 6.0·10-41.00 1.00 n/a n/a
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Motif analysis

KLF9_HUMAN Concordant
KLF9_HUMAN pic

Genetic associations

GRASP fasting blood glucose,  hdl cholesterol,  ldl cholesterol,  mitral annular calcium,  total cholesterol,  triglycerides
GTEx eQTL Adipose_Subcutaneous,  Artery_Aorta,  Artery_Tibial,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Esophagus_Gastroesophageal_Junction,  Esophagus_Muscularis,  Nerve_Tibial,  Skin_Sun_Exposed_Lower_leg,  Thyroid

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