rs11696017 chr2:71024063 C>T
- Sequence
cgcatttgtcagcccttgccaaaa[C/T]ggtgaggcagcggtgtgttacctg
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) Detroit 562 (Pharyngeal squamous cell carcinoma) MCF7 WS8 cells
- ASB for transcription factors
- TF65_HUMAN RFX1_HUMAN GATA3_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TF65_HUMAN | 1.54 | -0.53 | 1.17 | n/a | No Hit | |||
| RFX1_HUMAN | 1.44 | -0.44 | 1.42 | n/a | No Hit | |||
| GATA3_HUMAN | 2.27 | -1.79 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid