rs11709398 chr3:186384444 A>G
- Sequence
tgaattaaagttacagtacctaaa[A/G]taaacagtttgctagtttgtgctt
- ASB in cell types
- LNCaP (prostate carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | n/a | 2.44 | 1.50 | 3.84 | Concordant |
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Motif analysis
Genetic associations
GRASP adiponectin levels, alzheimers disease, eye color, fasting insulin, hdl cholesterol change with statins, homa-b, homa-ir, neuroblastoma (brain cancer), serum creatinine, total cholesterol