rs117357870 chr20:50464388 A>C
- Sequence
cccggagtcccccacaaaccggcc[A/C]gctcagaggttcttccgacagttt
- ASB in cell types
- GM10847 (female B-cells Lymphoblastoid Cell Lines) HCT-116 (colon carcinoma) TTC-1240 (Rhabdoid tumor of the kidney) HeLa (cervical adenocarcinoma)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN STAG1_HUMAN PMEPA_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.96 | -0.29 | 1.43 | n/a | No Hit | |||
| RAD21_HUMAN | 1.49 | 0.14 | 1.24 | n/a | n/a | |||
| STAG1_HUMAN | 1.46 | -1.46 | 1.50 | n/a | n/a | |||
| PMEPA_HUMAN | 2.15 | n/a | 2.00 | n/a | n/a |
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