rs1174590 chr9:9790222 A>G
- Sequence
gtgaatgtttgttttgttttcttg[A/G]tgtattgtcttggacattggacaa
- ASB in cell types
- neural cell GM12892 (female B-cells lymphoblastoid cell line) GM12890 (Lymphoblastoid Cell Lines) LNCaP (prostate carcinoma)
- ASB for transcription factors
- CTCF_HUMAN EP300_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.08 | 0.56 | 1.15 | n/a | No Hit | |||
| EP300_HUMAN | 2.30 | -1.98 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration, advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, ldl cholesterol change with statins