rs11748597 chr5:1950819 A>G

Sequence
gcgcgagtcgtccgctgtgtgtgc[A/G]tcatctgctgtgcgtgtgtcatct
ASB in cell types
HEK293 (embryonic kidney) HCASMC (Human coronary artery smooth muscle cells) foreskin keratinocyte
ASB for transcription factors
JUND_HUMAN ZBT21_HUMAN INSM2_HUMAN OZF_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
JUND_HUMAN 2.88 n/a 1.1·10-61.00 1.33 2.37 Discordant
ZBT21_HUMAN n/a 1.29 1.001.9·10-4 6.00 n/a n/a
INSM2_HUMAN n/a 2.25 1.003.4·10-4 3.00 n/a n/a
OZF_HUMAN n/a 3.71 1.003.1·10-3 3.00 n/a No Hit
ZN558_HUMAN n/a 2.76 1.003.7·10-3 3.00 n/a n/a
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Motif analysis

JUND_HUMAN Discordant
JUND_HUMAN pic

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Artery_Tibial,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Nerve_Tibial,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Thyroid

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