rs117679913 chr19:10483880 G>A
- Sequence
gggattacaggcacatgccaccac[G/A]ggcagctaatttttgtatttttag
- ASB in cell types
- foreskin keratinocyte GM19193 (female B-cells Lymphoblastoid Cell Lines) GM17942 (lymphoblastoid cell)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.90 | -1.91 | 2.00 | -0.39 | Weak Concordant | |||
| STAG1_HUMAN | 2.67 | -2.33 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Esophagus_Muscularis, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg