rs11850550 chr14:32668014 G>C
- Sequence
cctattatacatctttgatgttta[G/C]tttctaccagaaagtaaataagga
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) MCF7 TamR (invasive ductal breast carcinoma Tamoxifen resistant) MCF-7L (invasive ductal carcinoma) breast tumor
- ASB for transcription factors
- FOXA1_HUMAN GATA3_HUMAN ARI1A_HUMAN ESR1_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | -0.21 | 2.33 | 1.52 | 5.31 | Concordant | |||
| GATA3_HUMAN | -0.07 | 2.64 | 1.50 | n/a | No Hit | |||
| ARI1A_HUMAN | -0.32 | 2.22 | 2.00 | n/a | n/a | |||
| ESR1_HUMAN | -0.28 | 1.11 | 1.64 | n/a | No Hit | |||
| GCR_HUMAN | -0.24 | 1.40 | 1.12 | n/a | No Hit |
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Motif analysis
