rs11868966 chr17:80892199 A>C
- Sequence
cttggctccgtggctcggtgagtc[A/C]tgtcaggcgtgctttctcacacgt
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) CAR-T cells GM02255 (Lymphoblastoid Cell Lines) sigmoid colon
- ASB for transcription factors
- CTCF_HUMAN EP300_HUMAN ATF7_HUMAN IKZF1_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.92 | 0.00 | 1.35 | n/a | No Hit | |||
| EP300_HUMAN | 2.46 | -0.38 | 1.36 | n/a | n/a | |||
| ATF7_HUMAN | 2.73 | -2.47 | 1.00 | n/a | n/a | |||
| IKZF1_HUMAN | 1.31 | -2.67 | 1.50 | n/a | No Hit | |||
| IRF4_HUMAN | 1.06 | -0.97 | 1.00 | n/a | No Hit |
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Motif analysis
