rs11905487 chr20:5529300 T>A
- Sequence
tagttcagaattcttcaccttttt[T/A]taaaaaaaatatttatttatttat
- ASB in cell types
- GM02610 (Lymphoblastoid Cell Lines) GM19099 (female B-cells Lymphoblastoid Cell Lines) glioblastoma cells foreskin keratinocyte
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.51 | 2.90 | 1.50 | n/a | No Hit | |||
| STAG1_HUMAN | 1.60 | 0.54 | 2.83 | n/a | n/a |
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