rs11907563 chr20:58515537 G>A
- Sequence
cgtgaggcggaggacaggctgggg[G/A]atcccaaagggtgcgctccagccc
- ASB in cell types
- MDA-MB-231p27CK-DD (breast cancer cells, phosphimimetic p27 cell line) MDA-MB-231 (breast adenocarcinoma) MDA-MB-231-1833 (breast cancer cells, bone-tropic metastatic line) SUM159PT (Triple negative breast cancer)
- ASB for transcription factors
- CDN1B_HUMAN JUN_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CDN1B_HUMAN | n/a | 3.10 | 3.00 | n/a | n/a | |||
| JUN_HUMAN | 0.13 | 2.34 | 3.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Tibial, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Muscularis, Muscle_Skeletal, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg