rs11908339 chr20:63909837 G>A
- Sequence
gcctgcggggggcagcagaggccc[G/A]cctgggccagggcgtgcaccagac
- ASB in cell types
- foreskin keratinocyte neutrophils from periferal blood pancreas prostate gland
- ASB for transcription factors
- CTCF_HUMAN STAT1_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.51 | 0.38 | 1.24 | -1.23 | Weak Concordant | |||
| STAT1_HUMAN | 2.67 | n/a | 3.00 | n/a | No Hit | |||
| RAD21_HUMAN | 2.49 | 0.81 | 1.58 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Tibial, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Lung, Muscle_Skeletal, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Whole_Blood