rs1198978 chr1:43265670 A>G
- Sequence
taaacagcaccaaaggaaaacatt[A/G]catattaactaggcccgactctgc
- ASB in cell types
- liver 22RV1 (prostate carcinoma)
- ASB for transcription factors
- HNF4A_HUMAN RXRA_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| HNF4A_HUMAN | 2.72 | -4.72 | 1.50 | n/a | No Hit | |||
| RXRA_HUMAN | 2.32 | -1.95 | 1.50 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Heart_Left_Ventricle, Nerve_Tibial, Ovary, Stomach, Thyroid